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 | Acceso al texto completo restringido a Biblioteca INIA Las Brujas. Por información adicional contacte bibliolb@inia.org.uy. |
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Registro completo
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Biblioteca (s) : |
INIA Las Brujas. |
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Fecha : |
28/07/2023 |
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Actualizado : |
28/07/2023 |
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Tipo de producción científica : |
Artículos en Revistas Indexadas Internacionales |
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Autor : |
RODRÍGUEZ, J.D.; PERIPOLLI, E.; LONDOÑO-GIL, M.; ESPIGOLAN, R.; LÔBO, R. B.; LÓPEZ-CORREA, R.; AGUILAR, I.; BALDI, F. |
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Afiliación : |
JUAN DIEGO RODRÍGUEZ, Faculdade de Ciências Agrarias e Veterinárias, Departamento de Zootecnia, Universidade Estadual Paulista (Unesp), Jaboticabal, 14884-900, Brazil.; ELISA PERIPOLLI, Faculdade de Ciências Agrarias e Veterinárias, Departamento de Zootecnia, Universidade Estadual Paulista (Unesp), Jaboticabal, 14884-900, Brazil; MARISOL LONDOÑO-GIL, Faculdade de Ciências Agrarias e Veterinárias, Departamento de Zootecnia, Universidade Estadual Paulista (Unesp), Jaboticabal, 14884-900, Brazil; RAFAEL ESPIGOLAN, Faculdade de Zootecnia e Engenharia de Alimentos, Departamento de Medicina Veterinária, Universidade de São Paulo (Usp), Pirassununga, 13535-900, Brazil.; RAYSILDO BARBOSA LÔBO, Associação Nacional de Criadores e Pesquisadores, Ribeirão Preto, Brazil; RODRIGO LÓPEZ-CORREA, Facultad de Veterinaria, Departamento de Genética y Mejoramiento Animal, Universidad de la República, Montevideo, Uruguay; IGNACIO AGUILAR GARCIA, INIA (Instituto Nacional de Investigación Agropecuaria), Uruguay; FERNANDO BALDI, Faculdade de Ciências Agrarias e Veterinárias, Departamento de Zootecnia, Universidade Estadual Paulista (Unesp), Jaboticabal, 14884-900, Brazil. |
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Título : |
Effect of minor allele frequency and density of single nucleotide polymorphism marker arrays on imputation performance and prediction ability using the single-step genomic Best Linear Unbiased Prediction in a simulated beef cattle population. |
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Complemento del título : |
Research paper. |
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Fecha de publicación : |
2023 |
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Fuente / Imprenta : |
Animal Production Science. 2023, volume 63, issue 9, p. 844-852. https://doi.org/10.1071/AN21581 |
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ISSN : |
1836-0939; eISSN: 1836-5787. |
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DOI : |
10.1071/AN21581 |
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Idioma : |
Inglés |
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Notas : |
Article history: Submitted 1 December 2021, Accepted 1 March 2023, Published 4 April 2023. -- Correspondence to: Juan Diego Rodríguez,
Universidade Estadual Paulista (Unesp), Faculdade de Ciências Agrarias e Veterinárias, Departamento de Zootecnia, Jaboticabal, 14884-900, Brazil. Email: juan.diego@unesp.br -- Handling Editor: Kim Bunter. -- |
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Contenido : |
Context: In beef cattle populations, there is little evidence regarding the minimum number of genetic markers needed to obtain reliable genomic prediction and imputed genotypes.
Aims: This study aimed to evaluate the impact of single nucleotide polymorphism (SNP) marker density and minor allele frequency (MAF), on genomic predictions and imputation performance for high and low heritability traits using the single-step genomic Best Linear Unbiased Prediction methodology (ssGBLUP) in a simulated beef cattle population.
© 2023 The Author(s) (or their employer(s)). Published by CSIRO Publishing |
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Palabras claves : |
Bias; Bovine; Customised SNP arrays; Genomic selection; Imputation accuracy; Inflation; MAF; Simulation. |
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Asunto categoría : |
L10 Genética y mejoramiento animal |
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Marc : |
LEADER 02068naa a2200337 a 4500
001 1064277
005 2023-07-28
008 2023 bl uuuu u00u1 u #d
022 $a1836-0939; eISSN: 1836-5787.
024 7 $a10.1071/AN21581$2DOI
100 1 $aRODRÍGUEZ, J.D.
245 $aEffect of minor allele frequency and density of single nucleotide polymorphism marker arrays on imputation performance and prediction ability using the single-step genomic Best Linear Unbiased Prediction in a simulated beef cattle population.$h[electronic resource]
260 $c2023
500 $aArticle history: Submitted 1 December 2021, Accepted 1 March 2023, Published 4 April 2023. -- Correspondence to: Juan Diego Rodríguez, Universidade Estadual Paulista (Unesp), Faculdade de Ciências Agrarias e Veterinárias, Departamento de Zootecnia, Jaboticabal, 14884-900, Brazil. Email: juan.diego@unesp.br -- Handling Editor: Kim Bunter. --
520 $aContext: In beef cattle populations, there is little evidence regarding the minimum number of genetic markers needed to obtain reliable genomic prediction and imputed genotypes. Aims: This study aimed to evaluate the impact of single nucleotide polymorphism (SNP) marker density and minor allele frequency (MAF), on genomic predictions and imputation performance for high and low heritability traits using the single-step genomic Best Linear Unbiased Prediction methodology (ssGBLUP) in a simulated beef cattle population. © 2023 The Author(s) (or their employer(s)). Published by CSIRO Publishing
653 $aBias
653 $aBovine
653 $aCustomised SNP arrays
653 $aGenomic selection
653 $aImputation accuracy
653 $aInflation
653 $aMAF
653 $aSimulation
700 1 $aPERIPOLLI, E.
700 1 $aLONDOÑO-GIL, M.
700 1 $aESPIGOLAN, R.
700 1 $aLÔBO, R. B.
700 1 $aLÓPEZ-CORREA, R.
700 1 $aAGUILAR, I.
700 1 $aBALDI, F.
773 $tAnimal Production Science. 2023, volume 63, issue 9, p. 844-852. https://doi.org/10.1071/AN21581
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| 2. |  | GARAYCOCHEA, S.; ALTIER, N.; LEONI, C.; NEAL, A.L.; ROMERO, H. Abundance and phylogenetic distribution of eight key enzymes of the phosphorus biogeochemical cycle in grassland soils. Research article. Environmental Microbiology Reports, 2023. https://doi.org/10.1111/1758-2229.13159 --OPEN ACCESS. [Article in Press] Article history: Received 28 December 2022; Accepted 12 April 2023. -- Correspondence: Héctor Romero, Laboratorio de Organización y Evolución del Genoma/Genómica Evolutiva, Departamento de Ecología y Evolución, Facultad de Ciencias/CURE,...| Tipo: Artículos en Revistas Indexadas Internacionales | Circulación / Nivel : Internacional - -- |
| Biblioteca(s): INIA Las Brujas. |
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| 3. | | BABIN, D.; LEONI, C.; NEAL, A.L.; SESSITSCH, A.; SMALLA, K. Editorial to the thematic topic "Towards a more sustainable agriculture through managing soil microbiomes". FEMS Microbiology Ecology, August 2021, volume 97, Issue 81, Article number fiab094. Doi: https://doi.org/10.1093/femsec/fiab094 Article history: Received 22 June 2021, Accepted 22 June 2021, Published 14 July 2021.
The workshop was co-organized and financed by Julius Kühn Institute (JKI, Germany) and the Instituto Nacional de Investigación Agropecuaria (INIA,...| Tipo: Artículos en Revistas Indexadas Internacionales | Circulación / Nivel : Internacional - -- |
| Biblioteca(s): INIA Las Brujas. |
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| 4. | | NEAL, A. L.; BARRAT, H. A.; BACQ-LEBREUIL, A.; QIN, Y.; ZHANG, X.; TAKAHASHI, T.; RUBIO, V.; HUGHES, D.; CLARK, I. M.; CÁRDENAS, L. M.; GARDINER, L. J.; KRISHNA, R.; GLENDINING, M. L.; RITZ, K.; MOONEY, S. J.; CRAWFORD, J. W. Arable soil nitrogen dynamics reflect organic inputs via the extended composite phenotype. Nature Food, 2023, Volume 4, Issue 1, Pages 51 - 60. doi: https://doi.org/10.1038/s43016-022-00671-z Article history: Received 04 February 2022; Accepted 14 November 2022; Published 23 December 2022. -- Corresponding author: Neal, A.L.; Net Zero and Resilient Farming, Rothamsted Research, North Wyke, United Kingdom;...| Tipo: Artículos en Revistas Indexadas Internacionales | Circulación / Nivel : Internacional - -- |
| Biblioteca(s): INIA Las Brujas. |
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| 5. | | RIVERO, M.J.; LÓPEZ-VILLALOBOS, N.; EVANS, A.; BERNDT, A.; CARTMILL, A.; NEAL, A. L.; MCLAREN, A.; FARRUGGIA, A.; MIGNOLET, C.; CHADWICK, D.; STYLES, D.; MCCRACKEN, D.; BUSCH, D.; MARTIN, G. B.; FLEMING, H.; SHERIDAN, H.; GIBBONS, J.; MERBOLD, L.; EISLER, M.; LAMBE, N.; ROVIRA, P.J.; HARRIS, P.; MURPHY, P.; VERCOE, P. E.; WILLIAMS, P.; MACHADO, R.; TAKAHASHI, T.; PUECH, T.; BOLAND, T.; AYALA, W.; LEE, M.R.F. Key traits for ruminant livestock across diverse production systems in the context of climate change: perspectives from a global platform of research farms. Reproduction, Fertility and Development, 8 January 2021, vol. 33, p. 1-19. OPEN ACCESS. Doi: https://doi.org/10.1071/RD20205 Article history: Published online 8 January 2021.
Corresponding author: michael.lee@rothamsted.ac.uk| Tipo: Artículos en Revistas Indexadas Internacionales | Circulación / Nivel : -- - -- |
| Biblioteca(s): INIA Treinta y Tres. |
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| 6. | | GEORGE, T.S.; GILES, C.D.; MENEZES-BLACKBURN, D.; CONDRON, L.M.; GAMA-RODRIGUES, A.C.; JAISI, D.; LANG, F.; NEAL, A.L.; STUTTER, M.I.; ALMEIDA, D.S.; BOL, R.; CABUGAO, K.G.; CELI, L.; COTNER, J.B.; FENG, G.; GOLL, D.S.; HALLAMA, M.; KRUEGER, J.; PLASSARD, C.; ROSLING, A.; DARCH, T.; FRASER, T.; GIESLER, R.; RICHARDSON, A.E.; TAMBURINI, F.; SHAND, C.A.; LUMSDON, D.G.; ZHANG, H.; BLACKWEL, M.S.A.; WEARING, C.; MEZELI, M.M.; ALMÅS, Å.R.; AUDETTE, Y.; BERTRAND, I.; BEYHAUT, E.; BOITT, G.; BRADSHAW, N.; BREARLEY, C.A.; BRUULSEMA, T.W.; CIAIS, P.; COZZOLINO, V.; DURAN, P.C.; MORA, M.L.; DE MENEZES, A.B.; DODD, R.J.; DUNFIELD, K.; ENGL, C.; FRAZÃO, J.J.; GARLAND, G.; GONZÁLEZ JIMÉNEZ, J.L.; GRACA, J.; GRANGER, S.J.; HARRISON, A.F.; HEUCK, C.; HOU, E.Q.; JOHNES, P.J.; KAISER, K.; KJÆR. H.A.; KLUMPP, E.; LAMB, A.L.; MACINTOSH, K.A.A; MACKAY, E.B.; MCGRATH, J.; MCINTYRE, C.; MCLAREN, T.; MÉSZÁROS, E.; MISSONG, A.; MOOSHAMMER, M.; NEGRÓN, C.P.; NELSON, L.A.; PFAHLER, V.; POBLETE-GRANT, P.; RANDALL, M.; SEGUEL, A.; SETH, K.; SMITH, A.C.; SMITS, M.M.; SOBARZO, J.A.; SPOHN, M.; TAWARAYA, K.; TIBBETT, M.; VORONEY, V.; WALLANDER, H.; WANG, L.; WASAKI, J.; HAYGARTH, P.M. Organic phosphorus in the terrestrial environment: a perspective on the state of the art and future priorities. Plant and Soil, 1 June 2018, Volume 427, Issue 1-2, Pages 191-208. Article history: Received: 28 April 2017 /Accepted: 17 August 2017 / Published online: 6 October 2017.
Update notice: Correction to: Organic phosphorus in the terrestrial environment: a perspective on the state of the art and future...| Tipo: Artículos en Revistas Indexadas Internacionales | Circulación / Nivel : Internacional - -- |
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